HL_8VVS_047

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_047 not in the Motif Atlas

Geometric match to HL_8CRE_035

Geometric discrepancy: 0.0925

The information below is about HL_8CRE_035

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VVS|1|WA|G|2580
8VVS|1|WA|G|2581
8VVS|1|WA|U|2582
8VVS|1|WA|A|2583
8VVS|1|WA|A|2584
8VVS|1|WA|C|2585

Current chains

Chain WA

28S rRNA

Nearby chains

Chain FA

L34

Chain Y

L27