HL_8VVS_052

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

8VVS|1|WA|C|2796, 8VVS|1|WA|G|2798, 8VVS|1|WA|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_052 not in the Motif Atlas

Geometric match to HL_8P9A_152

Geometric discrepancy: 0.0789

The information below is about HL_8P9A_152

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

8VVS|1|WA|C|2794
8VVS|1|WA|G|2795
8VVS|1|WA|C|2796
8VVS|1|WA|A|2797
8VVS|1|WA|G|2798
8VVS|1|WA|C|2799
8VVS|1|WA|A|2800
8VVS|1|WA|G|2801

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain IA

L37

Chain KA

eL39

Chain O

uL22