HL_8VVS_057

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

8VVS|1|WA|A|3644, 8VVS|1|WA|A|3645, 8VVS|1|WA|U|3646, 8VVS|1|WA|A|3650

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_057 not in the Motif Atlas

Geometric match to HL_4WF9_043

Geometric discrepancy: 0.1668

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VVS|1|WA|U|3641
8VVS|1|WA|U|3642
8VVS|1|WA|U|3643
8VVS|1|WA|A|3644
8VVS|1|WA|A|3645
8VVS|1|WA|U|3646
8VVS|1|WA|U|3647
8VVS|1|WA|A|3648
8VVS|1|WA|A|3649
8VVS|1|WA|A|3650
8VVS|1|WA|A|3651

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain IA

L37