HL_8VVS_074

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8VVS|1|WA|G|4477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_074 not in the Motif Atlas

Geometric match to HL_8P9A_173

Geometric discrepancy: 0.1651

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8VVS|1|WA|A|4476
8VVS|1|WA|G|4477
8VVS|1|WA|C|4478
8VVS|1|WA|A|4479
8VVS|1|WA|G|4480
8VVS|1|WA|A|4481
8VVS|1|WA|A|4482
8VVS|1|WA|U|4483

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

L9

Chain LA

eL40