HL_8VVS_075

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_075 not in the Motif Atlas

Geometric match to HL_8P9A_174

Geometric discrepancy: 0.1245

The information below is about HL_8P9A_174

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8VVS|1|WA|U|4499
8VVS|1|WA|U|4500
8VVS|1|WA|G|4501
8VVS|1|WA|U|4502
8VVS|1|WA|U|4503
8VVS|1|WA|C|4504
8VVS|1|WA|A|4505

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3