HL_8VVS_100

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8VVS|1|ZA|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_100 not in the Motif Atlas

Geometric match to HL_4LFB_009

Geometric discrepancy: 0.1012

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8VVS|1|ZA|C|462
8VVS|1|ZA|C|463
8VVS|1|ZA|A|464
8VVS|1|ZA|A|465
8VVS|1|ZA|G|466
8VVS|1|ZA|G|467

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

eS6

Chain HC

eukaryotic elongation factor 1 A

Chain U

L23

Chain UA

Transfer RNA; tRNA