HL_8VVS_103

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_103 not in the Motif Atlas

Geometric match to HL_8P9A_203

Geometric discrepancy: 0.1905

The information below is about HL_8P9A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVS|1|ZA|A|569
8VVS|1|ZA|C|570
8VVS|1|ZA|U|571
8VVS|1|ZA|U|572
8VVS|1|ZA|U|573
8VVS|1|ZA|A|574
8VVS|1|ZA|A|575
8VVS|1|ZA|A|576
8VVS|1|ZA|U|577
8VVS|1|ZA|C|578
8VVS|1|ZA|C|579
8VVS|1|ZA|U|580
8VVS|1|ZA|U|581

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain JB

S9

Chain YB

S24