HL_8VVS_112

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_112 not in the Motif Atlas

Geometric match to HL_8CRE_215

Geometric discrepancy: 0.0827

The information below is about HL_8CRE_215

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVS|1|ZA|U|1178
8VVS|1|ZA|G|1179
8VVS|1|ZA|C|1180
8VVS|1|ZA|A|1181
8VVS|1|ZA|A|1182
8VVS|1|ZA|A|1183

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain MA

eL41

Chain OA

eL43

Chain WA

Large subunit ribosomal RNA; LSU rRNA