HL_8VVS_114

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8VVS|1|ZA|U|1300, 8VVS|1|ZA|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_114 not in the Motif Atlas

Geometric match to HL_4V9F_043

Geometric discrepancy: 0.2779

The information below is about HL_4V9F_043

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8VVS|1|ZA|A|1295
8VVS|1|ZA|U|1296
8VVS|1|ZA|U|1297
8VVS|1|ZA|G|1298
8VVS|1|ZA|A|1299
8VVS|1|ZA|U|1300
8VVS|1|ZA|A|1301
8VVS|1|ZA|G|1302
8VVS|1|ZA|C|1303
8VVS|1|ZA|U|1304

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain DC

uS14

Chain FC

S27A

Chain PB

S15