HL_8VVS_118

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

8VVS|1|ZA|U|1462, 8VVS|1|ZA|U|1463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_118 not in the Motif Atlas

Geometric match to HL_1F1T_001

Geometric discrepancy: 0.3055

The information below is about HL_1F1T_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59843.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VVS|1|ZA|C|1460
8VVS|1|ZA|G|1461
8VVS|1|ZA|U|1462
8VVS|1|ZA|U|1463
8VVS|1|ZA|C|1464
8VVS|1|ZA|A|1465
8VVS|1|ZA|G|1466

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GC

RACK1

Chain RB

eS17