HL_8VVS_121
3D structure
- PDB id
- 8VVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 8VVS|1|ZA|A|1663, 8VVS|1|ZA|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVS_121 not in the Motif Atlas
- Geometric match to HL_8CRE_224
- Geometric discrepancy: 0.3228
- The information below is about HL_8CRE_224
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_61418.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8VVS|1|ZA|G|1658
8VVS|1|ZA|U|1659
8VVS|1|ZA|C|1660
8VVS|1|ZA|A|1661
8VVS|1|ZA|U|1662
8VVS|1|ZA|A|1663
8VVS|1|ZA|A|1664
8VVS|1|ZA|G|1665
8VVS|1|ZA|C|1666
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain DC
- uS14
- Chain QB
- uS9
- Chain TB
- S19
- Chain UB
- uS10
Coloring options: