HL_8VVT_006

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

8VVT|1|WA|U|224, 8VVT|1|WA|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_006 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.0705

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8VVT|1|WA|C|222
8VVT|1|WA|G|223
8VVT|1|WA|U|224
8VVT|1|WA|G|225
8VVT|1|WA|G|226

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain X

L26