HL_8VVT_014
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAGACCCG
- Length
- 9 nucleotides
- Bulged bases
- 8VVT|1|WA|A|971, 8VVT|1|WA|C|972
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVT_014 not in the Motif Atlas
- Geometric match to HL_12CJ_003
- Geometric discrepancy: 0.3963
- The information below is about HL_12CJ_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_59138.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8VVT|1|WA|C|967
8VVT|1|WA|G|968
8VVT|1|WA|A|969
8VVT|1|WA|G|970
8VVT|1|WA|A|971
8VVT|1|WA|C|972
8VVT|1|WA|C|973
8VVT|1|WA|C|974
8VVT|1|WA|G|975
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain E
- L6
- Chain F
- uL30
Coloring options: