HL_8VVT_015

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

8VVT|1|WA|C|1331

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_015 not in the Motif Atlas

Geometric match to HL_8CRE_013

Geometric discrepancy: 0.1164

The information below is about HL_8CRE_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8VVT|1|WA|U|1323
8VVT|1|WA|C|1324
8VVT|1|WA|U|1325
8VVT|1|WA|U|1326
8VVT|1|WA|G|1327
8VVT|1|WA|1MA|1328
8VVT|1|WA|A|1329
8VVT|1|WA|A|1330
8VVT|1|WA|C|1331
8VVT|1|WA|A2M|1332

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain DA

eL32

Chain Z

uL15