HL_8VVT_023

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

8VVT|1|WA|C|1681, 8VVT|1|WA|A|1684

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_023 not in the Motif Atlas

Homologous match to HL_9H3G_028

Geometric discrepancy: 0.1983

The information below is about HL_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.4

Basepair signature

cWW-F-F

Number of instances in this motif group

12

Unit IDs

8VVT|1|WA|C|1680
8VVT|1|WA|C|1681
8VVT|1|WA|PSU|1682
8VVT|1|WA|C|1683
8VVT|1|WA|A|1684
8VVT|1|WA|G|1685

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

eL29

Chain NA

eL42

Chain Z

uL15