HL_8VVT_033

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

8VVT|1|WA|G|2426, 8VVT|1|WA|U|2430

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_033 not in the Motif Atlas

Geometric match to HL_9DFE_036

Geometric discrepancy: 0.1432

The information below is about HL_9DFE_036

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8VVT|1|WA|A|2425
8VVT|1|WA|G|2426
8VVT|1|WA|OMC|2427
8VVT|1|WA|A|2428
8VVT|1|WA|OMG|2429
8VVT|1|WA|U|2430
8VVT|1|WA|U|2431

Current chains

Chain WA

28S rRNA

Nearby chains

Chain KA

eL39

Chain O

uL22

Chain Q

eL19