HL_8VVT_035

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCUC

Length

5 nucleotides

Bulged bases

8VVT|1|WA|C|2493, 8VVT|1|WA|C|2494

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_035 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.3936

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8VVT|1|WA|G|2492
8VVT|1|WA|C|2493
8VVT|1|WA|C|2494
8VVT|1|WA|U|2495
8VVT|1|WA|C|2496

Current chains

Chain WA

28S rRNA

Nearby chains

Chain YA

5.8S ribosomal RNA; 5.8S rRNA