HL_8VVT_041

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

8VVT|1|WA|U|2713, 8VVT|1|WA|C|2714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_041 not in the Motif Atlas

Geometric match to HL_9BZC_001

Geometric discrepancy: 0.3546

The information below is about HL_9BZC_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8VVT|1|WA|G|2710
8VVT|1|WA|G|2711
8VVT|1|WA|U|2712
8VVT|1|WA|U|2713
8VVT|1|WA|C|2714
8VVT|1|WA|C|2715

Current chains

Chain WA

28S rRNA

Nearby chains

Chain Q

eL19

Chain b

Proliferation-associated protein 2G4