HL_8VVT_042

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

8VVT|1|WA|C|2744, 8VVT|1|WA|U|2745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_042 not in the Motif Atlas

Geometric match to HL_6LTU_001

Geometric discrepancy: 0.0967

The information below is about HL_6LTU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8VVT|1|WA|C|2743
8VVT|1|WA|C|2744
8VVT|1|WA|U|2745
8VVT|1|WA|U|2746
8VVT|1|WA|G|2747

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

L8

Chain OA

eL43