HL_8VVT_044

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

8VVT|1|WA|C|2819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_044 not in the Motif Atlas

Geometric match to HL_8P9A_153

Geometric discrepancy: 0.1366

The information below is about HL_8P9A_153

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8VVT|1|WA|U|2815
8VVT|1|WA|G|2816
8VVT|1|WA|A|2817
8VVT|1|WA|A|2818
8VVT|1|WA|C|2819
8VVT|1|WA|A|2820
8VVT|1|WA|G|2821

Current chains

Chain WA

28S rRNA

Nearby chains

Chain Q

eL19