HL_8VVT_047

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUGC

Length

5 nucleotides

Bulged bases

8VVT|1|WA|G|3620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_047 not in the Motif Atlas

Homologous match to HL_9H3G_048

Geometric discrepancy: 0.2081

The information below is about HL_9H3G_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_16651.3

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

8VVT|1|WA|G|3619
8VVT|1|WA|G|3620
8VVT|1|WA|U|3621
8VVT|1|WA|G|3622
8VVT|1|WA|C|3623

Current chains

Chain WA

28S rRNA

Nearby chains

Chain Q

eL19

Chain V

L24