HL_8VVT_053

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAACG(P7G)GC

Length

10 nucleotides

Bulged bases

8VVT|1|WA|A|3881, 8VVT|1|WA|A|3882, 8VVT|1|WA|C|3883

QA status

Modified nucleotides: P7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_053 not in the Motif Atlas

Geometric match to HL_8CRE_049

Geometric discrepancy: 0.0753

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8VVT|1|WA|G|3878
8VVT|1|WA|G|3879
8VVT|1|WA|G|3880
8VVT|1|WA|A|3881
8VVT|1|WA|A|3882
8VVT|1|WA|C|3883
8VVT|1|WA|G|3884
8VVT|1|WA|P7G|3885
8VVT|1|WA|G|3886
8VVT|1|WA|C|3887

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain DA

eL32