HL_8VVT_055

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

C(I4U)G(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8VVT|1|WA|G|4200

QA status

Modified nucleotides: I4U, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_055 not in the Motif Atlas

Geometric match to HL_8P9A_165

Geometric discrepancy: 0.1197

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8VVT|1|WA|C|4198
8VVT|1|WA|I4U|4199
8VVT|1|WA|G|4200
8VVT|1|WA|OMG|4201
8VVT|1|WA|G|4202
8VVT|1|WA|G|4203
8VVT|1|WA|C|4204
8VVT|1|WA|G|4205
8VVT|1|WA|G|4206

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

eL29

Chain I

L10