HL_8VVT_057

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_057 not in the Motif Atlas

Geometric match to HL_4V9F_057

Geometric discrepancy: 0.2425

The information below is about HL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8VVT|1|WA|G|4255
8VVT|1|WA|A|4256
8VVT|1|WA|C|4257
8VVT|1|WA|A|4258
8VVT|1|WA|G|4259
8VVT|1|WA|A|4260
8VVT|1|WA|A|4261
8VVT|1|WA|A|4262
8VVT|1|WA|C|4263

Current chains

Chain WA

28S rRNA

Nearby chains

Chain J

L11