HL_8VVT_062

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_062 not in the Motif Atlas

Geometric match to HL_5J7L_193

Geometric discrepancy: 0.1248

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VVT|1|WA|C|4422
8VVT|1|WA|G|4423
8VVT|1|WA|U|4424
8VVT|1|WA|U|4425
8VVT|1|WA|C|4426
8VVT|1|WA|A|4427
8VVT|1|WA|U|4428
8VVT|1|WA|A|4429
8VVT|1|WA|G|4430

Current chains

Chain WA

28S rRNA

Nearby chains

Chain I

L10

Chain LA

eL40

Chain v

eukaryotic elongation factor 2