HL_8VVT_066

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_066 not in the Motif Atlas

Geometric match to HL_8ITS_001

Geometric discrepancy: 0.0814

The information below is about HL_8ITS_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8VVT|1|WA|C|4608
8VVT|1|WA|G|4609
8VVT|1|WA|A|4610
8VVT|1|WA|G|4611
8VVT|1|WA|A|4612
8VVT|1|WA|G|4613

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

uL6

Chain LA

eL40

Chain v

eukaryotic elongation factor 2