HL_8VVT_067

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_067 not in the Motif Atlas

Geometric match to HL_5J7L_198

Geometric discrepancy: 0.1363

The information below is about HL_5J7L_198

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8VVT|1|WA|U|4651
8VVT|1|WA|G|4652
8VVT|1|WA|A|4653
8VVT|1|WA|G|4654
8VVT|1|WA|G|4655
8VVT|1|WA|A|4656

Current chains

Chain WA

28S rRNA

Nearby chains

Chain CA

eL31

Chain Q

eL19

Chain T

eL22