HL_8VVT_068

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CU(B8K)AACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8VVT|1|WA|G|4699, 8VVT|1|WA|C|4703

QA status

Modified nucleotides: B8K

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_068 not in the Motif Atlas

Geometric match to HL_8CRE_066

Geometric discrepancy: 0.0839

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8VVT|1|WA|C|4693
8VVT|1|WA|U|4694
8VVT|1|WA|B8K|4695
8VVT|1|WA|A|4696
8VVT|1|WA|A|4697
8VVT|1|WA|C|4698
8VVT|1|WA|G|4699
8VVT|1|WA|C|4700
8VVT|1|WA|C|4701
8VVT|1|WA|U|4702
8VVT|1|WA|C|4703
8VVT|1|WA|U|4704
8VVT|1|WA|A|4705
8VVT|1|WA|A|4706
8VVT|1|WA|G|4707

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

uL6

Chain LA

eL40

Chain N

uL13