HL_8VVT_070

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8VVT|1|WA|U|4981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_070 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1014

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VVT|1|WA|G|4980
8VVT|1|WA|U|4981
8VVT|1|WA|A|4982
8VVT|1|WA|G|4983
8VVT|1|WA|A|4984
8VVT|1|WA|C|4985
8VVT|1|WA|G|4986
8VVT|1|WA|A|4987
8VVT|1|WA|C|4988

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL22