HL_8VVT_076

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

8VVT|1|YA|U|110, 8VVT|1|YA|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_076 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.2074

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8VVT|1|YA|C|107
8VVT|1|YA|A|108
8VVT|1|YA|C|109
8VVT|1|YA|U|110
8VVT|1|YA|U|111
8VVT|1|YA|G|112

Current chains

Chain YA

5.8S rRNA

Nearby chains

Chain IA

L37

Chain KA

eL39

Chain W

uL23

Chain WA

Large subunit ribosomal RNA; LSU rRNA