HL_8VVT_080

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8VVT|1|ZA|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_080 not in the Motif Atlas

Geometric match to HL_8CRE_193

Geometric discrepancy: 0.1962

The information below is about HL_8CRE_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVT|1|ZA|G|156
8VVT|1|ZA|U|157
8VVT|1|ZA|A|158
8VVT|1|ZA|A|159
8VVT|1|ZA|U|160
8VVT|1|ZA|U|161
8VVT|1|ZA|C|162

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

S6

Chain YB

eS24