HL_8VVT_087

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

8VVT|1|ZA|A|500, 8VVT|1|ZA|C|502, 8VVT|1|ZA|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_087 not in the Motif Atlas

Geometric match to HL_8CRE_202

Geometric discrepancy: 0.2863

The information below is about HL_8CRE_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8VVT|1|ZA|C|498
8VVT|1|ZA|G|499
8VVT|1|ZA|A|500
8VVT|1|ZA|C|501
8VVT|1|ZA|C|502
8VVT|1|ZA|C|503
8VVT|1|ZA|G|504

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

eS4

Chain YB

eS24