HL_8VVT_091

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8VVT|1|ZA|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_091 not in the Motif Atlas

Geometric match to HL_8CRE_207

Geometric discrepancy: 0.1275

The information below is about HL_8CRE_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8VVT|1|ZA|U|820
8VVT|1|ZA|G|821
8VVT|1|ZA|U|822
8VVT|1|ZA|U|823
8VVT|1|ZA|C|824
8VVT|1|ZA|A|825
8VVT|1|ZA|A|826
8VVT|1|ZA|A|827
8VVT|1|ZA|G|828

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

eS4

Chain JB

S9

Chain YB

eS24