HL_8VVT_104

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_104 not in the Motif Atlas

Geometric match to HL_9DFE_061

Geometric discrepancy: 0.2098

The information below is about HL_9DFE_061

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVT|1|ZA|C|1565
8VVT|1|ZA|G|1566
8VVT|1|ZA|G|1567
8VVT|1|ZA|C|1568
8VVT|1|ZA|A|1569
8VVT|1|ZA|G|1570

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain SB

uS13

Chain TB

eS19