HL_8VVU_006

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_006 not in the Motif Atlas

Geometric match to HL_7K98_003

Geometric discrepancy: 0.2684

The information below is about HL_7K98_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

8VVU|1|SA|G|53
8VVU|1|SA|U|54
8VVU|1|SA|U|55
8VVU|1|SA|C|56
8VVU|1|SA|G|57
8VVU|1|SA|A|58
8VVU|1|SA|A|59
8VVU|1|SA|A|60
8VVU|1|SA|C|61

Current chains

Chain SA

P-site tRNA

Nearby chains

Chain J

uL5

Chain NA

eL42

Chain WA

Large subunit ribosomal RNA; LSU rRNA