8VVU Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8VVU_002 | 1/At/31:39 | tRNA anticodon loop | geometric HL_6CFJ_107 HL_81376.1 | |
| HL_8VVU_005 | 1/SA/31:39 | tRNA anticodon loop | geometric HL_4V9Q_214 HL_81376.1 | |
| HL_8VVU_010 | 1/WA/37:44 | No text annotation | geometric HL_4WF9_006 HL_48677.1 | |
| HL_8VVU_011 | 1/WA/68:73 | No text annotation | geometric HL_8P9A_114 HL_51020.1 | |
| HL_8VVU_012 | 1/WA/89:95 | No text annotation | geometric HL_8CRE_003 NA | |
| HL_8VVU_013 | 1/WA/131:138 | No text annotation | ||
| HL_8VVU_014 | 1/WA/204:211 | T-loop with 2 bulged bases not stacked | geometric HL_1P6V_004 NA | |
| HL_8VVU_015 | 1/WA/222:226 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_8VVU_016 | 1/WA/230:238 | No text annotation | ||
| HL_8VVU_017 | 1/WA/289:298 | T-loop related | geometric HL_8P9A_120 HL_63894.1 | |
| HL_8VVU_018 | 1/WA/314:323 | No text annotation | geometric HL_8CRE_009 NA | |
| HL_8VVU_019 | 1/WA/368:373 | GNRA | geometric HL_5J7L_027 NA | |
| HL_8VVU_020 | 1/WA/393:398 | GNRA | geometric HL_2ZZM_003 NA | |
| HL_8VVU_024 | 1/WA/1319:1328 | T-loop with 2 stacked bulged bases | geometric HL_8CRE_013 NA | |
| HL_8VVU_025 | 1/WA/1365:1376 | No text annotation | ||
| HL_8VVU_026 | 1/WA/1391:1396 | GNRA | geometric HL_8CRE_015 NA | |
| HL_8VVU_028 | 1/WA/1481:1488 | UNCG variation | geometric HL_5J7L_200 NA | |
| HL_8VVU_030 | 1/WA/1595:1604 | No text annotation | geometric HL_8CRE_019 NA | |
| HL_8VVU_031 | 1/WA/1629:1637 | No text annotation | geometric HL_8CRE_020 NA | |
| HL_8VVU_032 | 1/WA/1677:1682 | No text annotation | ||
| HL_8VVU_034 | 1/WA/1818:1825 | No text annotation | ||
| HL_8VVU_035 | 1/WA/1866:1872 | GNRA | geometric HL_8P9A_137 HL_34789.1 | |
| HL_8VVU_036 | 1/WA/1888:1895 | No text annotation | geometric HL_8P9A_138 HL_47171.1 | |
| HL_8VVU_039 | 1/WA/2089:2272 | No text annotation | ||
| HL_8VVU_040 | 1/WA/2319:2324 | GNRA | geometric HL_8CRE_029 NA | |
| HL_8VVU_041 | 1/WA/2378:2386 | T-loop with 2 stacked bulged bases | geometric HL_8CRE_030 NA | |
| HL_8VVU_042 | 1/WA/2422:2428 | Pseudoknot geometry with 3' bulge | geometric HL_9DFE_036 HL_49081.1 | |
| HL_8VVU_043 | 1/WA/2460:2465 | GNRA variation | geometric HL_8CRE_032 NA | |
| HL_8VVU_047 | 1/WA/2580:2585 | GNRA | geometric HL_8CRE_035 NA | |
| HL_8VVU_048 | 1/WA/2626:2634 | Pseudoknot geometry | geometric HL_8P9A_148 HL_68642.1 | |
| HL_8VVU_049 | 1/WA/2666:2672 | Other HL | geometric HL_4V9F_039 HL_67772.1 | |
| HL_8VVU_051 | 1/WA/2740:2744 | Mini UNCG | geometric HL_4V9F_041 HL_90436.1 | |
| HL_8VVU_052 | 1/WA/2794:2801 | No text annotation | geometric HL_8P9A_152 HL_28592.1 | |
| HL_8VVU_053 | 1/WA/2812:2818 | GNRA | geometric HL_8P9A_153 HL_34789.1 | |
| HL_8VVU_054 | 1/WA/2874:2879 | UNCG | geometric HL_4PMI_004 NA | |
| HL_8VVU_056 | 1/WA/3616:3620 | No text annotation | ||
| HL_8VVU_057 | 1/WA/3641:3651 | No text annotation | geometric HL_8CRE_044 NA | |
| HL_8VVU_058 | 1/WA/3670:3676 | GNRA | geometric HL_8P9A_125 HL_34789.1 | |
| HL_8VVU_059 | 1/WA/3726:3731 | GNRA | geometric HL_3SUX_002 HL_34789.1 | |
| HL_8VVU_060 | 1/WA/3759:3769 | No text annotation | geometric HL_8CRE_047 NA | |
| HL_8VVU_061 | 1/WA/3798:3806 | No text annotation | geometric HL_8CRE_048 NA | |
| HL_8VVU_062 | 1/WA/3875:3884 | No text annotation | geometric HL_8CRE_049 NA | |
| HL_8VVU_066 | 1/WA/4195:4203 | No text annotation | geometric HL_4V9F_055 HL_11974.1 | |
| HL_8VVU_067 | 1/WA/4212:4224 | No text annotation | geometric HL_4WF9_050 HL_02042.1 | |
| HL_8VVU_068 | 1/WA/4252:4260 | No text annotation | geometric HL_8CRE_055 NA | |
| HL_8VVU_069 | 1/WA/4272:4279 | Pseudoknot geometry | geometric HL_8CRE_056 NA | |
| HL_8VVU_070 | 1/WA/4303:4311 | No text annotation | geometric HL_8CRE_057 NA | |
| HL_8VVU_071 | 1/WA/4323:4328 | GNRA | geometric HL_8CRE_058 NA | |
| HL_8VVU_072 | 1/WA/4354:4364 | No text annotation | geometric HL_7JRT_001 NA | |
| HL_8VVU_073 | 1/WA/4419:4427 | No text annotation | geometric HL_4V9F_062 HL_52011.1 | |
| HL_8VVU_074 | 1/WA/4476:4483 | GNRA variation | geometric HL_8CRE_061 NA | |
| HL_8VVU_075 | 1/WA/4499:4505 | No text annotation | geometric HL_8P9A_174 HL_48677.1 | |
| HL_8VVU_076 | 1/WA/4542:4547 | GNRA | geometric HL_4WF9_059 HL_34789.1 | |
| HL_8VVU_077 | 1/WA/4605:4610 | GNRA | geometric HL_3LQX_001 HL_34789.1 | |
| HL_8VVU_078 | 1/WA/4648:4653 | Ribsomal LSU H95 | geometric HL_5J7L_198 NA | |
| HL_8VVU_079 | 1/WA/4690:4704 | No text annotation | geometric HL_8CRE_066 NA | |
| HL_8VVU_081 | 1/WA/4908:4917 | No text annotation | ||
| HL_8VVU_082 | 1/WA/4977:4985 | No text annotation | geometric HL_5J7L_201 NA | |
| HL_8VVU_084 | 1/XA/32:45 | No text annotation | geometric HL_8OI5_068 HL_01182.1 | |
| HL_8VVU_085 | 1/XA/36:41 | No text annotation | geometric HL_8OI5_069 HL_59381.1 | |
| HL_8VVU_086 | 1/XA/86:91 | GNRA | geometric HL_5B2T_001 HL_34789.1 | |
| HL_8VVU_087 | 1/YA/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_17803.1 | |
| HL_8VVU_088 | 1/YA/68:90 | No text annotation | ||
| HL_8VVU_091 | 1/ZA/7:17 | No text annotation | geometric HL_8CRE_191 HL_31940.1 | |
| HL_8VVU_097 | 1/ZA/377:387 | No text annotation | ||
| HL_8VVU_098 | 1/ZA/416:421 | GNRA variation | geometric HL_8CRE_199 HL_34789.1 | |
| HL_8VVU_099 | 1/ZA/441:452 | No text annotation | geometric HL_8CRE_200 HL_86432.1 | |
| HL_8VVU_104 | 1/ZA/618:623 | No text annotation | geometric HL_8CRE_205 HL_93535.2 | |
| HL_8VVU_108 | 1/ZA/994:999 | GNRA | geometric HL_8CRE_211 HL_34789.1 | |
| HL_8VVU_109 | 1/ZA/1054:1064 | No text annotation | geometric HL_8CRE_212 HL_38491.1 | |
| HL_8VVU_111 | 1/ZA/1141:1146 | GNRA | geometric HL_8P9A_159 HL_34789.1 | |
| HL_8VVU_112 | 1/ZA/1178:1183 | GNRA | geometric HL_8CRE_018 NA | |
| HL_8VVU_113 | 1/ZA/1245:1254 | No text annotation | geometric HL_8CRE_216 HL_97521.1 | |
| HL_8VVU_115 | 1/ZA/1353:1358 | GNRA | geometric HL_8P9A_217 HL_34789.1 | |
| HL_8VVU_116 | 1/ZA/1366:1373 | T-loop related | geometric HL_8CRE_219 HL_63894.1 | |
| HL_8VVU_120 | 1/ZA/1614:1625 | No text annotation | ||
| HL_8VVU_121 | 1/ZA/1658:1666 | No text annotation | ||
| HL_8VVU_122 | 1/ZA/1847:1852 | GNRA | geometric HL_5J7L_031 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8VVU_001 | No text annotation | ||
| HL_8VVU_003 | T-loop with 2 stacked bulged bases | ||
| HL_8VVU_004 | tRNA D-loop | ||
| HL_8VVU_006 | T-loop with 2 stacked bulged bases | ||
| HL_8VVU_007 | tRNA D-loop | ||
| HL_8VVU_008 | GNRA wlth tandem sheared | ||
| HL_8VVU_009 | T-loop with 2 stacked bulged bases | ||
| HL_8VVU_021 | No text annotation | ||
| HL_8VVU_022 | No text annotation | ||
| HL_8VVU_023 | No text annotation | ||
| HL_8VVU_027 | No text annotation | ||
| HL_8VVU_029 | GNRA | ||
| HL_8VVU_033 | No text annotation | ||
| HL_8VVU_037 | No text annotation | ||
| HL_8VVU_038 | GNRA wlth tandem sheared | ||
| HL_8VVU_044 | No text annotation | ||
| HL_8VVU_045 | No text annotation | ||
| HL_8VVU_046 | GNRA | ||
| HL_8VVU_050 | No text annotation | ||
| HL_8VVU_055 | No text annotation | ||
| HL_8VVU_063 | No text annotation | ||
| HL_8VVU_064 | No text annotation | ||
| HL_8VVU_065 | No text annotation | ||
| HL_8VVU_080 | No text annotation | ||
| HL_8VVU_083 | No text annotation | ||
| HL_8VVU_089 | No text annotation | ||
| HL_8VVU_090 | No text annotation | ||
| HL_8VVU_092 | No text annotation | ||
| HL_8VVU_093 | GNRA related | ||
| HL_8VVU_094 | No text annotation | ||
| HL_8VVU_095 | T-loop with 1 bulged base | ||
| HL_8VVU_096 | No text annotation | ||
| HL_8VVU_100 | UNCG | ||
| HL_8VVU_101 | No text annotation | ||
| HL_8VVU_102 | No text annotation | ||
| HL_8VVU_103 | No text annotation | ||
| HL_8VVU_105 | No text annotation | ||
| HL_8VVU_106 | No text annotation | ||
| HL_8VVU_107 | No text annotation | ||
| HL_8VVU_110 | No text annotation | ||
| HL_8VVU_114 | GNRA wlth tandem sheared | ||
| HL_8VVU_117 | UNCG variation | ||
| HL_8VVU_118 | GNRA related | ||
| HL_8VVU_119 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8VVU_001 | 1/SA/2:4, 1/SA/69:71 | Isolated non-canonical cWW pair | geometric IL_7ZLQ_002 IL_01003.1 | |
| IL_8VVU_003 | 1/WA/6:7, 1/YA/149:151 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_8VVU_004 | 1/WA/11:14, 1/YA/143:145 | Isolated non-canonical cWW pair | geometric IL_8OI5_140 IL_01003.1 | |
| IL_8VVU_005 | 1/WA/16:18, 1/YA/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
| IL_8VVU_006 | 1/WA/26:27, 1/WA/55:57 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_8VVU_007 | 1/WA/30:37, 1/WA/44:52 | tSH-tHW-tHH-tHS | geometric IL_8CRE_005 NA | |
| IL_8VVU_008 | 1/WA/81:88, 1/WA/96:102 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8CRE_006 NA | |
| IL_8VVU_009 | 1/WA/118:121, 1/WA/152:153 | Stack outside cWW | geometric IL_5J7L_268 NA | |
| IL_8VVU_010 | 1/WA/118:122, 1/WA/147:153 | No text annotation | ||
| IL_8VVU_011 | 1/WA/121:122, 1/WA/147:152 | No text annotation | geometric IL_8P9A_236 IL_10396.1 | |
| IL_8VVU_012 | 1/WA/125:126, 1/WA/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_8VVU_014 | 1/WA/168:174, 1/WA/263:267 | No text annotation | ||
| IL_8VVU_019 | 1/WA/199:201, 1/WA/214:215 | No text annotation | geometric IL_8CRE_013 NA | |
| IL_8VVU_020 | 1/WA/339:342, 1/YA/32:33 | Minor groove platform | geometric IL_9DFE_073 IL_24264.1 | |
| IL_8VVU_021 | 1/WA/348:350, 1/YA/25:26 | Single bulged A | geometric IL_8CRE_014 NA | |
| IL_8VVU_022 | 1/WA/387:390, 1/WA/401:414 | No text annotation | geometric IL_8CRE_015 NA | |
| IL_8VVU_023 | 1/WA/415:421, 1/YA/13:19 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 NA | |
| IL_8VVU_024 | 1/WA/443:446, 1/WA/1302:1306 | Tandem non-canonical cWW pairs | geometric IL_5J7L_033 NA | |
| IL_8VVU_025 | 1/WA/448:450, 1/WA/1299:1300 | No text annotation | ||
| IL_8VVU_034 | 1/WA/509:511, 1/WA/650:651 | Single bulged A | geometric IL_6WPI_001 IL_14190.1 | |
| IL_8VVU_037 | 1/WA/724:725, 1/WA/947:950 | Multiple bulged bases | geometric IL_1R3E_001 IL_44609.1 | |
| IL_8VVU_038 | 1/WA/728:732, 1/WA/943:944 | No text annotation | ||
| IL_8VVU_039 | 1/WA/733:736, 1/WA/932:942 | No text annotation | ||
| IL_8VVU_040 | 1/WA/738:741, 1/WA/927:930 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_8VVU_041 | 1/WA/747:755, 1/WA/912:921 | No text annotation | ||
| IL_8VVU_049 | 1/WA/1359:1362, 1/WA/1381:1384 | No text annotation | ||
| IL_8VVU_050 | 1/WA/1359:1363, 1/WA/1378:1384 | No text annotation | ||
| IL_8VVU_052 | 1/WA/1427:1431, 1/WA/1457:1462 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_8VVU_054 | 1/WA/1469:1470, 1/WA/1498:1500 | Single bulged A | geometric IL_8CRE_026 NA | |
| IL_8VVU_055 | 1/WA/1476:1478, 1/WA/1491:1492 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_8VVU_056 | 1/WA/1522:1524, 1/WA/1657:1659 | Isolated non-canonical cWW pair | geometric IL_8P9A_255 IL_01003.1 | |
| IL_8VVU_057 | 1/WA/1524:1528, 1/WA/1650:1657 | No text annotation | geometric IL_8CRE_030 NA | |
| IL_8VVU_058 | 1/WA/1552:1553, 1/WA/1578:1580 | Single bulged G | geometric IL_4WF9_023 IL_28408.1 | |
| IL_8VVU_059 | 1/WA/1553:1557, 1/WA/1574:1578 | Triple sheared | geometric IL_8CRE_072 NA | |
| IL_8VVU_060 | 1/WA/1588:1591, 1/WA/1607:1609 | No text annotation | geometric IL_8CRE_034 NA | |
| IL_8VVU_061 | 1/WA/1592:1594, 1/WA/1605:1606 | No text annotation | geometric IL_8CRE_035 NA | |
| IL_8VVU_062 | 1/WA/1626:1628, 1/WA/1638:1642 | No text annotation | geometric IL_8CRE_036 NA | |
| IL_8VVU_063 | 1/WA/1673:1675, 1/WA/1684:1686 | Isolated non-canonical cWW pair | geometric IL_8CRE_037 NA | |
| IL_8VVU_064 | 1/WA/1688:1690, 1/WA/1850:1853 | No text annotation | ||
| IL_8VVU_065 | 1/WA/1696:1723, 1/WA/1843:1844 | No text annotation | ||
| IL_8VVU_066 | 1/WA/1725:1727, 1/WA/1840:1841 | No text annotation | geometric IL_8CRE_040 NA | |
| IL_8VVU_067 | 1/WA/1734:1739, 1/WA/1794:1799 | No text annotation | ||
| IL_8VVU_068 | 1/WA/1739:1740, 1/WA/1792:1794 | Minor groove platform | geometric IL_8CRE_042 NA | |
| IL_8VVU_069 | 1/WA/1741:1746, 1/WA/1788:1791 | C-loop with bulged stacked A's | geometric IL_8P9A_268 IL_16301.1 | |
| IL_8VVU_070 | 1/WA/1748:1751, 1/WA/1783:1786 | Tandem non-canonical cWW pairs | geometric IL_8P9A_269 IL_71194.1 | |
| IL_8VVU_071 | 1/WA/1751:1753, 1/WA/1781:1783 | Isolated non-canonical cWW pair | geometric IL_8P9A_270 IL_01003.1 | |
| IL_8VVU_074 | 1/WA/1816:1818, 1/WA/1825:1826 | No text annotation | geometric IL_8CRE_048 NA | |
| IL_8VVU_075 | 1/WA/1860:1862, 1/WA/1876:1878 | Isolated non-canonical cWW pair | geometric IL_8P9A_274 IL_01003.1 | |
| IL_8VVU_076 | 1/WA/1907:1911, 1/WA/2069:2073 | UAA/GAN | geometric IL_8CRE_051 NA | |
| IL_8VVU_077 | 1/WA/1913:1920, 1/WA/2066:2067 | SSU/LSU pseudoknot | geometric IL_4WF9_037 IL_11411.1 | |
| IL_8VVU_078 | 1/WA/1920:1922, 1/WA/2065:2066 | No text annotation | ||
| IL_8VVU_079 | 1/WA/1922:1924, 1/WA/2064:2065 | No text annotation | ||
| IL_8VVU_080 | 1/WA/1928:1935, 1/WA/2055:2060 | No text annotation | geometric IL_8CRE_054 NA | |
| IL_8VVU_081 | 1/WA/1935:1946, 1/WA/2040:2055 | No text annotation | geometric IL_8CRE_055 NA | |
| IL_8VVU_082 | 1/WA/1948:1950, 1/WA/2037:2038 | Single bulged U | geometric IL_8P9A_281 IL_97561.1 | |
| IL_8VVU_086 | 1/WA/2085:2087, 1/WA/2274:2275 | Single bulged U | geometric IL_4LFB_046 IL_97561.1 | |
| IL_8VVU_087 | 1/WA/2292:2294, 1/WA/2344:2347 | No text annotation | geometric IL_8CRE_061 NA | |
| IL_8VVU_088 | 1/WA/2301:2303, 1/WA/2336:2337 | Single bulged A | geometric IL_3OXE_001 IL_14190.1 | |
| IL_8VVU_089 | 1/WA/2304:2311, 1/WA/2331:2335 | Kink-turn | geometric IL_7EAG_003 IL_90775.1 | |
| IL_8VVU_090 | 1/WA/2314:2316, 1/WA/2327:2328 | Single bulged A | geometric IL_7DLZ_001 NA | |
| IL_8VVU_091 | 1/WA/2360:2366, 1/WA/3860:3865 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_8CRE_065 NA | |
| IL_8VVU_092 | 1/WA/2417:2421, 1/WA/2429:2431 | C-loop | geometric IL_4MGN_001 IL_63596.12 | |
| IL_8VVU_093 | 1/WA/2448:2452, 1/WA/2511:2516 | UAA/GAN | geometric IL_8CRE_067 NA | |
| IL_8VVU_098 | 1/WA/2551:2552, 1/WA/2770:2772 | Single bulged U | geometric IL_8TQX_001 NA | |
| IL_8VVU_099 | 1/WA/2591:2595, 1/WA/2754:2758 | Triple sheared | geometric IL_8P9A_295 IL_15190.1 | |
| IL_8VVU_100 | 1/WA/2615:2616, 1/WA/2726:2728 | Single bulged A | geometric IL_3B31_001 IL_14190.1 | |
| IL_8VVU_101 | 1/WA/2616:2618, 1/WA/2723:2726 | No text annotation | geometric IL_4N0T_004 IL_32983.1 | |
| IL_8VVU_102 | 1/WA/2648:2650, 1/WA/2687:2690 | No text annotation | ||
| IL_8VVU_103 | 1/WA/2653:2655, 1/WA/2683:2684 | Single bulged G | geometric IL_7D7W_002 IL_28408.1 | |
| IL_8VVU_104 | 1/WA/2658:2664, 1/WA/2674:2680 | No text annotation | geometric IL_8P9A_301 IL_93476.1 | |
| IL_8VVU_106 | 1/WA/2834:2840, 1/WA/3852:3855 | No text annotation | geometric IL_8P9A_302 IL_89862.1 | |
| IL_8VVU_107 | 1/WA/2846:2848, 1/WA/3844:3846 | No text annotation | geometric IL_8P9A_303 IL_10432.1 | |
| IL_8VVU_108 | 1/WA/2849:2852, 1/WA/3842:3843 | Major groove platform; stack outside cWW | geometric IL_8P9A_304 IL_74641.1 | |
| IL_8VVU_109 | 1/WA/2849:2857, 1/WA/3839:3843 | No text annotation | geometric IL_8P9A_305 IL_80252.1 | |
| IL_8VVU_110 | 1/WA/2852:2857, 1/WA/3839:3842 | No text annotation | geometric IL_8CRE_083 NA | |
| IL_8VVU_111 | 1/WA/2869:2874, 1/WA/2879:2885 | No text annotation | geometric IL_8CRE_084 NA | |
| IL_8VVU_112 | 1/WA/2891:2893, 1/WA/3612:3614 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.1 | |
| IL_8VVU_113 | 1/WA/2898:2899, 1/WA/3604:3607 | No text annotation | geometric IL_8CRE_086 NA | |
| IL_8VVU_114 | 1/WA/3634:3635, 1/WA/3829:3831 | Single bulged A | geometric IL_4V9F_064 IL_14190.1 | |
| IL_8VVU_115 | 1/WA/3662:3667, 1/WA/3679:3686 | No text annotation | geometric IL_8CRE_088 NA | |
| IL_8VVU_116 | 1/WA/3702:3705, 1/WA/3751:3752 | Minor groove platform, major groove intercalation | geometric IL_4V9F_066 IL_73108.1 | |
| IL_8VVU_117 | 1/WA/3706:3707, 1/WA/3747:3750 | Multiple bulged bases | geometric IL_3MXH_004 IL_71421.1 | |
| IL_8VVU_118 | 1/WA/3710:3712, 1/WA/3743:3744 | Single stack bend | geometric IL_8CRE_091 NA | |
| IL_8VVU_119 | 1/WA/3712:3715, 1/WA/3742:3743 | Minor groove platform | geometric IL_7A0S_028 IL_34520.1 | |
| IL_8VVU_120 | 1/WA/3717:3723, 1/WA/3734:3740 | No text annotation | geometric IL_8CRE_093 NA | |
| IL_8VVU_121 | 1/WA/3782:3783, 1/WA/3813:3816 | No text annotation | geometric IL_8CRE_094 NA | |
| IL_8VVU_122 | 1/WA/3783:3794, 1/WA/3810:3813 | No text annotation | geometric IL_8CRE_095 NA | |
| IL_8VVU_123 | 1/WA/3897:3900, 1/WA/4565:4567 | No text annotation | geometric IL_8CRE_096 NA | |
| IL_8VVU_124 | 1/WA/3902:3904, 1/WA/4560:4563 | No text annotation | geometric IL_8CRE_097 NA | |
| IL_8VVU_125 | 1/WA/3915:3917, 1/WA/4390:4391 | Single bulged U | geometric IL_9DFE_080 IL_97561.1 | |
| IL_8VVU_126 | 1/WA/3918:3919, 1/WA/4386:4389 | Minor groove platform | geometric IL_8P9A_322 IL_34520.1 | |
| IL_8VVU_127 | 1/WA/3929:3931, 1/WA/4183:4186 | No text annotation | geometric IL_8P9A_323 IL_87316.1 | |
| IL_8VVU_128 | 1/WA/4084:4090, 1/WA/4163:4166 | No text annotation | geometric IL_8CRE_106 NA | |
| IL_8VVU_130 | 1/WA/4193:4194, 1/WA/4204:4206 | Single bulged A | geometric IL_8P9A_325 IL_14190.1 | |
| IL_8VVU_131 | 1/WA/4245:4247, 1/WA/4265:4269 | No text annotation | geometric IL_8CRE_108 NA | |
| IL_8VVU_132 | 1/WA/4293:4295, 1/WA/4319:4320 | Single bulged A | geometric IL_8CRE_014 NA | |
| IL_8VVU_133 | 1/WA/4297:4300, 1/WA/4314:4317 | Tandem non-canonical cWW pairs | geometric IL_8CRE_440 IL_15225.1 | |
| IL_8VVU_134 | 1/WA/4349:4353, 1/WA/4365:4367 | No text annotation | geometric IL_8CRE_417 IL_32983.1 | |
| IL_8VVU_135 | 1/WA/4402:4403, 1/WA/4444:4446 | Major groove platform | geometric IL_9DFE_092 IL_48076.7 | |
| IL_8VVU_136 | 1/WA/4403:4405, 1/WA/4442:4444 | Isolated non-canonical cWW pair | geometric IL_8CRE_023 NA | |
| IL_8VVU_137 | 1/WA/4405:4407, 1/WA/4441:4442 | No text annotation | geometric IL_8CRE_112 NA | |
| IL_8VVU_138 | 1/WA/4407:4409, 1/WA/4437:4441 | No text annotation | geometric IL_8CRE_113 NA | |
| IL_8VVU_139 | 1/WA/4414:4418, 1/WA/4428:4432 | Double sheared with non-canonical cWW | geometric IL_8P9A_333 IL_87767.1 | |
| IL_8VVU_140 | 1/WA/4455:4456, 1/WA/4528:4531 | No text annotation | ||
| IL_8VVU_141 | 1/WA/4458:4460, 1/WA/4522:4526 | Isolated non-canonical cWW with bulges | geometric IL_8CRE_116 NA | |
| IL_8VVU_142 | 1/WA/4460:4461, 1/WA/4519:4522 | No text annotation | geometric IL_8CRE_117 NA | |
| IL_8VVU_143 | 1/WA/4468:4470, 1/WA/4491:4493 | Isolated non-canonical cWW pair | geometric IL_4YHW_002 NA | |
| IL_8VVU_144 | 1/WA/4470:4472, 1/WA/4487:4491 | No text annotation | ||
| IL_8VVU_145 | 1/WA/4497:4499, 1/WA/4505:4507 | Isolated non-canonical cWW pair | geometric IL_8P9A_340 IL_01003.1 | |
| IL_8VVU_146 | 1/WA/4539:4540, 1/WA/4549:4551 | Single bulged A | geometric IL_9C75_002 IL_14190.1 | |
| IL_8VVU_147 | 1/WA/4582:4584, 1/WA/4723:4725 | Isolated cWH basepair | geometric IL_4E5C_001 NA | |
| IL_8VVU_148 | 1/WA/4584:4587, 1/WA/4719:4723 | Double sheared | geometric IL_8P9A_342 IL_58355.1 | |
| IL_8VVU_149 | 1/WA/4592:4594, 1/WA/4620:4622 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.1 | |
| IL_8VVU_150 | 1/WA/4598:4605, 1/WA/4610:4616 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8CRE_125 NA | |
| IL_8VVU_151 | 1/WA/4626:4631, 1/WA/4671:4675 | No text annotation | ||
| IL_8VVU_152 | 1/WA/4634:4639, 1/WA/4664:4668 | No text annotation | geometric IL_8P9A_346 IL_98200.1 | |
| IL_8VVU_153 | 1/WA/4640:4642, 1/WA/4661:4663 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10892.1 | |
| IL_8VVU_154 | 1/WA/4643:4644, 1/WA/4657:4660 | Multiple bulged bases | geometric IL_5J7L_349 NA | |
| IL_8VVU_155 | 1/WA/4682:4687, 1/WA/4707:4712 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_8VVU_159 | 1/WA/4758:4769, 1/WA/4869:4879 | No text annotation | ||
| IL_8VVU_162 | 1/WA/4887:4890, 1/WA/4933:4936 | Tandem non-canonical cWW pairs | geometric IL_4XW0_002 NA | |
| IL_8VVU_163 | 1/WA/4893:4899, 1/WA/4926:4930 | No text annotation | ||
| IL_8VVU_165 | 1/WA/4974:4977, 1/WA/4985:4988 | Tandem non-canonical cWW pairs | geometric IL_8CRE_135 NA | |
| IL_8VVU_167 | 1/WA/4998:4999, 1/WA/5055:5057 | Single bulged C | geometric IL_1KUQ_002 IL_05642.1 | |
| IL_8VVU_168 | 1/WA/5002:5004, 1/WA/5047:5052 | No text annotation | geometric IL_8P9A_359 IL_00086.1 | |
| IL_8VVU_169 | 1/WA/5005:5011, 1/WA/5041:5046 | No text annotation | ||
| IL_8VVU_170 | 1/WA/5014:5016, 1/WA/5037:5038 | Single bulged C | geometric IL_6XKO_001 IL_05642.1 | |
| IL_8VVU_171 | 1/WA/5016:5019, 1/WA/5034:5037 | Double sheared | geometric IL_8CRE_141 NA | |
| IL_8VVU_172 | 1/XA/15:16, 1/XA/62:64 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_8VVU_173 | 1/XA/21:27, 1/XA/52:57 | No text annotation | geometric IL_8OI5_135 IL_41504.1 | |
| IL_8VVU_176 | 1/XA/71:78, 1/XA/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8CRE_125 NA | |
| IL_8VVU_177 | 1/XA/79:81, 1/XA/95:97 | Isolated non-canonical cWW pair | geometric IL_8P9A_459 IL_71625.1 | |
| IL_8VVU_178 | 1/XA/82:85, 1/XA/92:94 | Isolated non-canonical cWW pair | geometric IL_8OI5_140 IL_01003.1 | |
| IL_8VVU_179 | 1/YA/64:66, 1/YA/92:95 | Isolated non-canonical cWW with bulges | geometric IL_7ELQ_002 NA | |
| IL_8VVU_180 | 1/ZA/23:25, 1/ZA/649:651 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 NA | |
| IL_8VVU_195 | 1/ZA/359:364, 1/ZA/396:403 | Kink-turn with non-sequential stacking | geometric IL_8CRE_408 IL_46174.4 | |
| IL_8VVU_207 | 1/ZA/611:617, 1/ZA/624:632 | No text annotation | geometric IL_8CRE_423 IL_52042.1 | |
| IL_8VVU_208 | 1/ZA/663:665, 1/ZA/1162:1164 | Isolated non-canonical cWW pair | geometric IL_8CRE_130 NA | |
| IL_8VVU_209 | 1/ZA/665:671, 1/ZA/1161:1162 | No text annotation | geometric IL_8P9A_405 IL_20847.1 | |
| IL_8VVU_210 | 1/ZA/673:675, 1/ZA/1030:1032 | Isolated non-canonical cWW pair | geometric IL_8CRE_425 IL_01003.1 | |
| IL_8VVU_211 | 1/ZA/676:680, 1/ZA/1025:1029 | tSH-tHW-tHS | geometric IL_8CRE_426 IL_05821.1 | |
| IL_8VVU_214 | 1/ZA/802:803, 1/ZA/860:863 | No text annotation | geometric IL_8P9A_412 IL_73108.1 | |
| IL_8VVU_219 | 1/ZA/925:926, 1/ZA/1015:1017 | Single bulged U | geometric IL_8P9A_281 IL_97561.1 | |
| IL_8VVU_220 | 1/ZA/927:931, 1/ZA/1010:1014 | Partly complementary | geometric IL_8D29_010 IL_71154.1 | |
| IL_8VVU_222 | 1/ZA/942:945, 1/ZA/981:984 | Tandem non-canonical cWW pairs | geometric IL_8P9A_421 IL_15225.1 | |
| IL_8VVU_223 | 1/ZA/952:956, 1/ZA/967:974 | Kink-turn | geometric IL_6UFM_001 NA | |
| IL_8VVU_224 | 1/ZA/1042:1047, 1/ZA/1071:1073 | No text annotation | geometric IL_8CRE_437 IL_31359.1 | |
| IL_8VVU_225 | 1/ZA/1047:1051, 1/ZA/1067:1071 | tSH-tHW-tHS | geometric IL_8CRE_438 IL_05821.1 | |
| IL_8VVU_226 | 1/ZA/1091:1093, 1/ZA/1152:1158 | No text annotation | geometric IL_8CRE_439 IL_82706.2 | |
| IL_8VVU_228 | 1/ZA/1101:1103, 1/ZA/1129:1131 | Isolated cWH basepair | geometric IL_8CRE_411 IL_10892.1 | |
| IL_8VVU_230 | 1/ZA/1168:1175, 1/ZA/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_8CRE_442 IL_84044.1 | |
| IL_8VVU_231 | 1/ZA/1203:1204, 1/ZA/1694:1696 | Single bulged A | geometric IL_5J7L_039 NA | |
| IL_8VVU_232 | 1/ZA/1206:1208, 1/ZA/1691:1692 | Single bulged G | geometric IL_5J7L_040 NA | |
| IL_8VVU_233 | 1/ZA/1214:1218, 1/ZA/1680:1685 | No text annotation | ||
| IL_8VVU_234 | 1/ZA/1230:1232, 1/ZA/1526:1528 | Isolated non-canonical cWW pair | geometric IL_8CRE_446 IL_01003.1 | |
| IL_8VVU_235 | 1/ZA/1235:1236, 1/ZA/1521:1523 | Minor groove platform | geometric IL_8CRE_447 IL_34520.1 | |
| IL_8VVU_238 | 1/ZA/1325:1327, 1/ZA/1502:1503 | Single bulged U | geometric IL_3MEI_001 NA | |
| IL_8VVU_240 | 1/ZA/1329:1335, 1/ZA/1492:1500 | No text annotation | geometric IL_8P9A_439 IL_99893.1 | |
| IL_8VVU_241 | 1/ZA/1333:1335, 1/ZA/1492:1498 | No text annotation | geometric IL_8P9A_440 IL_93811.1 | |
| IL_8VVU_243 | 1/ZA/1347:1349, 1/ZA/1380:1382 | Isolated cWH basepair | geometric IL_8P9A_442 IL_10892.1 | |
| IL_8VVU_250 | 1/ZA/1550:1558, 1/ZA/1577:1582 | No text annotation | ||
| IL_8VVU_252 | 1/ZA/1604:1610, 1/ZA/1629:1635 | No text annotation | ||
| IL_8VVU_253 | 1/ZA/1700:1702, 1/ZA/1833:1836 | No text annotation | geometric IL_4LFB_056 IL_18228.1 | |
| IL_8VVU_254 | 1/ZA/1702:1705, 1/ZA/1829:1833 | No text annotation | geometric IL_8CRE_467 IL_25873.1 | |
| IL_8VVU_255 | 1/ZA/1706:1708, 1/ZA/1826:1828 | Isolated non-canonical cWW pair | geometric IL_8CRE_468 IL_01003.1 | |
| IL_8VVU_256 | 1/ZA/1708:1712, 1/ZA/1821:1826 | No text annotation | ||
| IL_8VVU_257 | 1/ZA/1714:1716, 1/ZA/1817:1819 | Isolated non-canonical cWW pair | geometric IL_8CRE_470 IL_01003.1 | |
| IL_8VVU_258 | 1/ZA/1717:1720, 1/ZA/1813:1816 | Double sheared | geometric IL_8CRE_471 IL_58355.1 | |
| IL_8VVU_259 | 1/ZA/1720:1722, 1/ZA/1812:1813 | No text annotation | geometric IL_8CRE_472 IL_97561.1 | |
| IL_8VVU_262 | 1/ZA/1739:1741, 1/ZA/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_01003.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8VVU_002 | Isolated non-canonical cWW pair | ||
| IL_8VVU_013 | Single stack bend | ||
| IL_8VVU_015 | Single stack bend | ||
| IL_8VVU_016 | Minor groove platform | ||
| IL_8VVU_017 | No text annotation | ||
| IL_8VVU_018 | Single bulged C | ||
| IL_8VVU_026 | Single bulged C | ||
| IL_8VVU_027 | Isolated non-canonical cWW pair | ||
| IL_8VVU_028 | No text annotation | ||
| IL_8VVU_029 | Single bulged C | ||
| IL_8VVU_030 | No text annotation | ||
| IL_8VVU_031 | Multiple bulged bases | ||
| IL_8VVU_032 | Single bulged U | ||
| IL_8VVU_033 | Single bulged C | ||
| IL_8VVU_035 | No text annotation | ||
| IL_8VVU_036 | Single bulged G | ||
| IL_8VVU_042 | No text annotation | ||
| IL_8VVU_043 | Isolated near basepair | ||
| IL_8VVU_044 | Isolated non-canonical cWW pair | ||
| IL_8VVU_045 | Single stack bend | ||
| IL_8VVU_046 | No text annotation | ||
| IL_8VVU_047 | Isolated cWH basepair | ||
| IL_8VVU_048 | Tandem non-canonical cWW pairs | ||
| IL_8VVU_051 | Single bulged A | ||
| IL_8VVU_053 | Double sheared | ||
| IL_8VVU_072 | Minor groove platform | ||
| IL_8VVU_073 | Isolated non-canonical cWW pair | ||
| IL_8VVU_083 | Kink-turn | ||
| IL_8VVU_084 | No text annotation | ||
| IL_8VVU_085 | No text annotation | ||
| IL_8VVU_094 | Minor groove platform | ||
| IL_8VVU_095 | Single stack bend | ||
| IL_8VVU_096 | No text annotation | ||
| IL_8VVU_097 | No text annotation | ||
| IL_8VVU_105 | No text annotation | ||
| IL_8VVU_129 | Single stack bend | ||
| IL_8VVU_156 | No text annotation | ||
| IL_8VVU_157 | Tandem non-canonical cWW pairs | ||
| IL_8VVU_158 | No text annotation | ||
| IL_8VVU_160 | Single stack bend | ||
| IL_8VVU_161 | No text annotation | ||
| IL_8VVU_164 | No text annotation | ||
| IL_8VVU_166 | Isolated non-canonical cWW pair | ||
| IL_8VVU_174 | Major groove minor groove platform; mini C-loop | ||
| IL_8VVU_175 | No text annotation | ||
| IL_8VVU_181 | Isolated non-canonical cWW pair | ||
| IL_8VVU_182 | Double sheared; A in syn | ||
| IL_8VVU_183 | No text annotation | ||
| IL_8VVU_184 | Minor groove platform | ||
| IL_8VVU_185 | No text annotation | ||
| IL_8VVU_186 | No text annotation | ||
| IL_8VVU_187 | No text annotation | ||
| IL_8VVU_188 | No text annotation | ||
| IL_8VVU_189 | No text annotation | ||
| IL_8VVU_190 | No text annotation | ||
| IL_8VVU_191 | Double sheared with non-canonical cWW | ||
| IL_8VVU_192 | No text annotation | ||
| IL_8VVU_193 | Single bulged A | ||
| IL_8VVU_194 | No text annotation | ||
| IL_8VVU_196 | No text annotation | ||
| IL_8VVU_197 | No text annotation | ||
| IL_8VVU_198 | Isolated cWH basepair | ||
| IL_8VVU_199 | Single bulged U | ||
| IL_8VVU_200 | C-loop | ||
| IL_8VVU_201 | No text annotation | ||
| IL_8VVU_202 | Single bulged A | ||
| IL_8VVU_203 | Isolated non-canonical cWW pair | ||
| IL_8VVU_204 | No text annotation | ||
| IL_8VVU_205 | Tandem non-canonical cWW pairs | ||
| IL_8VVU_206 | No text annotation | ||
| IL_8VVU_212 | Tandem non-canonical cWW pairs | ||
| IL_8VVU_213 | No text annotation | ||
| IL_8VVU_215 | Isolated non-canonical cWW pair | ||
| IL_8VVU_216 | No text annotation | ||
| IL_8VVU_217 | Isolated non-canonical cWW pair | ||
| IL_8VVU_218 | Isolated non-canonical cWW pair | ||
| IL_8VVU_221 | Tandem non-canonical cWW pairs | ||
| IL_8VVU_227 | Tandem non-canonical cWW pairs | ||
| IL_8VVU_229 | Minor groove platform | ||
| IL_8VVU_236 | No text annotation | ||
| IL_8VVU_237 | No text annotation | ||
| IL_8VVU_239 | Isolated cWS basepair | ||
| IL_8VVU_242 | Single bulged A | ||
| IL_8VVU_244 | Minor groove platform | ||
| IL_8VVU_245 | No text annotation | ||
| IL_8VVU_246 | Multiple bulged bases | ||
| IL_8VVU_247 | Single bulged G | ||
| IL_8VVU_248 | Isolated non-canonical cWW pair | ||
| IL_8VVU_249 | No text annotation | ||
| IL_8VVU_251 | Isolated non-canonical cWW pair | ||
| IL_8VVU_260 | Isolated non-canonical cWW pair | ||
| IL_8VVU_261 | Double sheared | ||
| IL_8VVU_263 | Triple sheared | ||
| IL_8VVU_264 | No text annotation | ||
| IL_8VVU_265 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8VVU_001 | 1/WA/112:116, 1/WA/155:160, 1/WA/275:278 | No text annotation | ||
| J3_8VVU_002 | 1/WA/351:367, 1/WA/374:379, 1/YA/21:24 | No text annotation | geometric J3_8CRE_004 NA | |
| J3_8VVU_003 | 1/WA/380:387, 1/WA/414:415, 1/YA/19:20 | No text annotation | geometric J3_4V9F_011 J3_68715.1 | |
| J3_8VVU_004 | 1/WA/380:390, 1/WA/401:415, 1/YA/19:20 | No text annotation | geometric J3_8CRE_006 NA | |
| J3_8VVU_005 | 1/WA/451:455, 1/WA/702:706, 1/WA/1294:1298 | No text annotation | ||
| J3_8VVU_006 | 1/WA/1533:1539, 1/WA/1624:1626, 1/WA/1642:1645 | No text annotation | geometric J3_8P9A_049 J3_46658.1 | |
| J3_8VVU_007 | 1/WA/1547:1550, 1/WA/1582:1586, 1/WA/1611:1616 | No text annotation | geometric J3_8P9A_050 J3_21998.1 | |
| J3_8VVU_008 | 1/WA/1728:1729, 1/WA/1804:1808, 1/WA/1834:1839 | No text annotation | ||
| J3_8VVU_010 | 1/WA/2395:2401, 1/WA/2807:2809, 1/WA/2821:2824 | No text annotation | geometric J3_8CRE_013 NA | |
| J3_8VVU_011 | 1/WA/2404:2407, 1/WA/2787:2793, 1/WA/2802:2804 | No text annotation | geometric J3_8CRE_014 NA | |
| J3_8VVU_012 | 1/WA/2442:2447, 1/WA/2517:2521, 1/WA/2538:2539 | No text annotation | geometric J3_8P9A_055 J3_94309.1 | |
| J3_8VVU_013 | 1/WA/2453:2458, 1/WA/2467:2478, 1/WA/2503:2510 | No text annotation | ||
| J3_8VVU_014 | 1/WA/2553:2557, 1/WA/2574:2577, 1/WA/2759:2769 | No text annotation | ||
| J3_8VVU_015 | 1/WA/2577:2578, 1/WA/2587:2591, 1/WA/2758:2759 | No text annotation | geometric J3_8CRE_017 NA | |
| J3_8VVU_016 | 1/WA/2600:2604, 1/WA/2739:2740, 1/WA/2744:2749 | No text annotation | geometric J3_8CRE_018 NA | |
| J3_8VVU_017 | 1/WA/3939:3941, 1/WA/4076:4080, 1/WA/4170:4175 | Kink-turn 3-way junction | geometric J3_5J7L_044 NA | |
| J3_8VVU_018 | 1/WA/4093:4096, 1/WA/4116:4131, 1/WA/4157:4160 | No text annotation | ||
| J3_8VVU_019 | 1/WA/4230:4232, 1/WA/4333:4344, 1/WA/4372:4377 | No text annotation | ||
| J3_8VVU_020 | 1/WA/4243:4245, 1/WA/4269:4271, 1/WA/4280:4285 | No text annotation | geometric J3_8P9A_062 J3_05327.1 | |
| J3_8VVU_021 | 1/WA/4465:4468, 1/WA/4493:4495, 1/WA/4509:4515 | No text annotation | geometric J3_8CRE_023 NA | |
| J3_8VVU_022 | 1/WA/4753:4756, 1/WA/4881:4885, 1/WA/4938:4950 | No text annotation | ||
| J3_8VVU_023 | 1/WA/4972:4974, 1/WA/4988:4993, 1/WA/5062:5065 | No text annotation | ||
| J3_8VVU_024 | 1/XA/9:14, 1/XA/65:66, 1/XA/109:110 | No text annotation | geometric J3_8OI5_025 J3_26985.1 | |
| J3_8VVU_025 | 1/YA/44:45, 1/YA/58:64, 1/YA/95:99 | No text annotation | ||
| J3_8VVU_027 | 1/ZA/682:685, 1/ZA/917:923, 1/ZA/1019:1023 | No text annotation | ||
| J3_8VVU_029 | 1/ZA/938:941, 1/ZA/985:993, 1/ZA/1000:1004 | No text annotation | geometric J3_8P9A_074 J3_23895.1 | |
| J3_8VVU_031 | 1/ZA/1214:1221, 1/ZA/1645:1651, 1/ZA/1673:1685 | No text annotation | ||
| J3_8VVU_032 | 1/ZA/1218:1221, 1/ZA/1645:1651, 1/ZA/1673:1680 | No text annotation | geometric J3_8CRE_078 J3_85722.1 | |
| J3_8VVU_033 | 1/ZA/1225:1228, 1/ZA/1530:1532, 1/ZA/1638:1641 | No text annotation | geometric J3_8CRE_079 J3_44359.1 | |
| J3_8VVU_034 | 1/ZA/1237:1244, 1/ZA/1255:1266, 1/ZA/1516:1520 | No text annotation | geometric J3_8CRE_080 J3_88451.1 | |
| J3_8VVU_035 | 1/ZA/1273:1277, 1/ZA/1320:1324, 1/ZA/1504:1510 | No text annotation | ||
| J3_8VVU_036 | 1/ZA/1340:1345, 1/ZA/1384:1389, 1/ZA/1481:1486 | No text annotation | ||
| J3_8VVU_037 | 1/ZA/1350:1351, 1/ZA/1360:1363, 1/ZA/1375:1379 | No text annotation | geometric J3_8CRE_083 J3_76043.4 | |
| J3_8VVU_038 | 1/ZA/1391:1399, 1/ZA/1447:1456, 1/ZA/1470:1479 | No text annotation | ||
| J3_8VVU_039 | 1/ZA/1532:1536, 1/ZA/1597:1604, 1/ZA/1635:1638 | No text annotation | geometric J3_4LFB_009 J3_03192.1 | |
| J4_8VVU_002 | 1/SA/7:10, 1/SA/25:27, 1/SA/43:49, 1/SA/65:66 | No text annotation | ||
| J4_8VVU_004 | 1/WA/111:112, 1/WA/278:283, 1/WA/304:310, 1/WA/327:330 | No text annotation | ||
| J4_8VVU_005 | 1/WA/196:199, 1/WA/215:222, 1/WA/226:228, 1/WA/240:244 | No text annotation | ||
| J4_8VVU_006 | 1/WA/713:714, 1/WA/960:966, 1/WA/976:983, 1/WA/1280:1286 | No text annotation | ||
| J4_8VVU_008 | 1/WA/2367:2373, 1/WA/2391:2393, 1/WA/2826:2831, 1/WA/3858:3859 | No text annotation | ||
| J4_8VVU_009 | 1/WA/2408:2412, 1/WA/2436:2441, 1/WA/2540:2541, 1/WA/2779:2786 | No text annotation | ||
| J4_8VVU_010 | 1/WA/2620:2621, 1/WA/2639:2644, 1/WA/2694:2700, 1/WA/2720:2721 | No text annotation | ||
| J4_8VVU_011 | 1/WA/3636:3640, 1/WA/3652:3656, 1/WA/3692:3696, 1/WA/3823:3828 | No text annotation | ||
| J4_8VVU_012 | 1/WA/3698:3700, 1/WA/3754:3755, 1/WA/3773:3782, 1/WA/3816:3821 | No text annotation | ||
| J4_8VVU_013 | 1/WA/4233:4237, 1/WA/4291:4293, 1/WA/4320:4321, 1/WA/4330:4332 | No text annotation | ||
| J4_8VVU_014 | 1/WA/4589:4592, 1/WA/4622:4623, 1/WA/4678:4680, 1/WA/4714:4717 | No text annotation | ||
| J4_8VVU_015 | 1/ZA/98:106, 1/ZA/355:357, 1/ZA/405:409, 1/ZA/431:432 | No text annotation | ||
| J4_8VVU_016 | 1/ZA/671:673, 1/ZA/1032:1037, 1/ZA/1078:1089, 1/ZA/1160:1161 | No text annotation | ||
| J5_8VVU_001 | 1/WA/19:21, 1/YA/35:42, 1/YA/101:106, 1/YA/113:114, 1/YA/136:138 | No text annotation | ||
| J5_8VVU_002 | 1/WA/1337:1342, 1/WA/1518:1521, 1/WA/1660:1663, 1/WA/2290:2292, 1/WA/2347:2353 | No text annotation | ||
| J5_8VVU_003 | 1/WA/2857:2865, 1/WA/2889:2890, 1/WA/3615:3616, 1/WA/3620:3628, 1/WA/3837:3839 | No text annotation | ||
| J5_8VVU_004 | 1/WA/3905:3912, 1/WA/4394:4402, 1/WA/4446:4455, 1/WA/4531:4536, 1/WA/4554:4559 | No text annotation | ||
| J5_8VVU_005 | 1/WA/3922:3925, 1/WA/4190:4193, 1/WA/4206:4207, 1/WA/4229:4230, 1/WA/4377:4383 | No text annotation | ||
| J5_8VVU_008 | 1/ZA/53:56, 1/ZA/89:96, 1/ZA/434:436, 1/ZA/457:461, 1/ZA/468:474 | No text annotation | ||
| J6_8VVU_001 | 1/WA/21:26, 1/WA/57:67, 1/WA/74:78, 1/WA/105:109, 1/WA/332:339, 1/YA/33:35 | No text annotation | ||
| J6_8VVU_002 | 1/WA/1354:1357, 1/WA/1386:1390, 1/WA/1397:1401, 1/WA/1420:1423, 1/WA/1466:1468, 1/WA/1501:1506 | No text annotation | ||
| J6_8VVU_003 | 1/WA/3922:3925, 1/WA/4190:4193, 1/WA/4206:4207, 1/WA/4229:4232, 1/WA/4333:4344, 1/WA/4372:4383 | No text annotation | ||
| J7_8VVU_001 | 1/WA/1668:1673, 1/WA/1686:1687, 1/WA/1854:1857, 1/WA/1881:1886, 1/WA/1897:1901, 1/WA/2079:2080, 1/WA/2280:2285 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8VVU_009 | No text annotation | ||
| J3_8VVU_026 | No text annotation | ||
| J3_8VVU_028 | No text annotation | ||
| J3_8VVU_030 | No text annotation | ||
| J4_8VVU_001 | No text annotation | ||
| J4_8VVU_003 | No text annotation | ||
| J4_8VVU_007 | No text annotation | ||
| J5_8VVU_006 | No text annotation | ||
| J5_8VVU_007 | No text annotation | ||
| J5_8VVU_009 | No text annotation |
Coloring options: