HL_8VVU_013

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCGGCGG

Length

8 nucleotides

Bulged bases

8VVU|1|WA|G|132, 8VVU|1|WA|G|134, 8VVU|1|WA|G|135, 8VVU|1|WA|C|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVU|1|WA|C|131
8VVU|1|WA|G|132
8VVU|1|WA|C|133
8VVU|1|WA|G|134
8VVU|1|WA|G|135
8VVU|1|WA|C|136
8VVU|1|WA|G|137
8VVU|1|WA|G|138

Current chains

Chain WA

28S rRNA

Nearby chains

Chain GA

L35

Chain IA

L37

Chain M

L15

Chain YA

5.8S ribosomal RNA; 5.8S rRNA