HL_8VVU_028

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

8VVU|1|WA|C|1483, 8VVU|1|WA|G|1484, 8VVU|1|WA|C|1487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_028 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.2847

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8VVU|1|WA|G|1481
8VVU|1|WA|C|1482
8VVU|1|WA|C|1483
8VVU|1|WA|G|1484
8VVU|1|WA|C|1485
8VVU|1|WA|G|1486
8VVU|1|WA|C|1487
8VVU|1|WA|C|1488

Current chains

Chain WA

28S rRNA

Nearby chains

Chain HA

L36

Chain K

eL13