HL_8VVU_034

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

8VVU|1|WA|G|1823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_034 not in the Motif Atlas

Homologous match to HL_8GLP_027

Geometric discrepancy: 0.326

The information below is about HL_8GLP_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

8VVU|1|WA|C|1818
8VVU|1|WA|U|1819
8VVU|1|WA|G|1820
8VVU|1|WA|G|1821
8VVU|1|WA|U|1822
8VVU|1|WA|G|1823
8VVU|1|WA|U|1824
8VVU|1|WA|G|1825

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

L29

Chain D

uL18

Chain S

eL21