HL_8VVU_038

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

8VVU|1|WA|A|2011

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_038 not in the Motif Atlas

Geometric match to HL_3HHN_010

Geometric discrepancy: 0.2994

The information below is about HL_3HHN_010

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8VVU|1|WA|U|2008
8VVU|1|WA|G|2009
8VVU|1|WA|U|2010
8VVU|1|WA|A|2011
8VVU|1|WA|A|2012
8VVU|1|WA|C|2013
8VVU|1|WA|A|2014
8VVU|1|WA|A|2015

Current chains

Chain WA

28S rRNA

Nearby chains

Chain LA

eL40

Chain RA

L12

Chain b

RPLP0