HL_8VVU_042

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8VVU|1|WA|G|2423, 8VVU|1|WA|U|2427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_042 not in the Motif Atlas

Geometric match to HL_9DFE_036

Geometric discrepancy: 0.1382

The information below is about HL_9DFE_036

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8VVU|1|WA|A|2422
8VVU|1|WA|G|2423
8VVU|1|WA|C|2424
8VVU|1|WA|A|2425
8VVU|1|WA|G|2426
8VVU|1|WA|U|2427
8VVU|1|WA|U|2428

Current chains

Chain WA

28S rRNA

Nearby chains

Chain O

uL22

Chain Q

eL19