HL_8VVU_048

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

8VVU|1|WA|U|2633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_048 not in the Motif Atlas

Geometric match to HL_8P9A_148

Geometric discrepancy: 0.2713

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_22758.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVU|1|WA|G|2626
8VVU|1|WA|U|2627
8VVU|1|WA|U|2628
8VVU|1|WA|C|2629
8VVU|1|WA|U|2630
8VVU|1|WA|C|2631
8VVU|1|WA|U|2632
8VVU|1|WA|U|2633
8VVU|1|WA|U|2634

Current chains

Chain WA

28S rRNA

Nearby chains

Chain Q

eL19

Chain T

eL22