HL_8VVU_051

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

8VVU|1|WA|C|2741, 8VVU|1|WA|U|2742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_051 not in the Motif Atlas

Geometric match to HL_4V9F_041

Geometric discrepancy: 0.0836

The information below is about HL_4V9F_041

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

8VVU|1|WA|C|2740
8VVU|1|WA|C|2741
8VVU|1|WA|U|2742
8VVU|1|WA|U|2743
8VVU|1|WA|G|2744

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain OA

eL43