HL_8VVU_054

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8VVU|1|WA|U|2876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_054 not in the Motif Atlas

Geometric match to HL_4PMI_004

Geometric discrepancy: 0.1045

The information below is about HL_4PMI_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8VVU|1|WA|C|2874
8VVU|1|WA|U|2875
8VVU|1|WA|U|2876
8VVU|1|WA|C|2877
8VVU|1|WA|G|2878
8VVU|1|WA|G|2879

Current chains

Chain WA

28S rRNA

Nearby chains

Chain MA

eL41

Chain OA

eL43

Chain ZA

Small subunit ribosomal RNA; SSU rRNA