HL_8VVU_073

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8VVU|1|WA|U|4421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_073 not in the Motif Atlas

Geometric match to HL_4V9F_062

Geometric discrepancy: 0.1844

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VVU|1|WA|C|4419
8VVU|1|WA|G|4420
8VVU|1|WA|U|4421
8VVU|1|WA|U|4422
8VVU|1|WA|C|4423
8VVU|1|WA|A|4424
8VVU|1|WA|U|4425
8VVU|1|WA|A|4426
8VVU|1|WA|G|4427

Current chains

Chain WA

28S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain I

L10

Chain LA

eL40