HL_8VVU_076

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_076 not in the Motif Atlas

Geometric match to HL_4WF9_059

Geometric discrepancy: 0.1325

The information below is about HL_4WF9_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8VVU|1|WA|C|4542
8VVU|1|WA|G|4543
8VVU|1|WA|U|4544
8VVU|1|WA|G|4545
8VVU|1|WA|A|4546
8VVU|1|WA|G|4547

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain SA

Transfer RNA; tRNA