HL_8VVU_079

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8VVU|1|WA|G|4696, 8VVU|1|WA|C|4700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_079 not in the Motif Atlas

Geometric match to HL_8CRE_066

Geometric discrepancy: 0.1341

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8VVU|1|WA|C|4690
8VVU|1|WA|U|4691
8VVU|1|WA|G|4692
8VVU|1|WA|A|4693
8VVU|1|WA|A|4694
8VVU|1|WA|C|4695
8VVU|1|WA|G|4696
8VVU|1|WA|C|4697
8VVU|1|WA|C|4698
8VVU|1|WA|U|4699
8VVU|1|WA|C|4700
8VVU|1|WA|U|4701
8VVU|1|WA|A|4702
8VVU|1|WA|A|4703
8VVU|1|WA|G|4704

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

L9

Chain LA

eL40

Chain N

uL13