HL_8VVU_093

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8VVU|1|ZA|U|161

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_093 not in the Motif Atlas

Geometric match to HL_8CRE_193

Geometric discrepancy: 0.376

The information below is about HL_8CRE_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVU|1|ZA|G|156
8VVU|1|ZA|U|157
8VVU|1|ZA|A|158
8VVU|1|ZA|A|159
8VVU|1|ZA|U|160
8VVU|1|ZA|U|161
8VVU|1|ZA|C|162

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

eS6

Chain YB

S24