HL_8VVU_094

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

8VVU|1|ZA|C|199, 8VVU|1|ZA|G|200, 8VVU|1|ZA|C|201

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_094 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.2647

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8VVU|1|ZA|U|197
8VVU|1|ZA|U|198
8VVU|1|ZA|C|199
8VVU|1|ZA|G|200
8VVU|1|ZA|C|201
8VVU|1|ZA|G|202

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain IB

S8