HL_8VVU_100

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8VVU|1|ZA|A|464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_100 not in the Motif Atlas

Geometric match to HL_6SY6_001

Geometric discrepancy: 0.1512

The information below is about HL_6SY6_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8VVU|1|ZA|C|462
8VVU|1|ZA|C|463
8VVU|1|ZA|A|464
8VVU|1|ZA|A|465
8VVU|1|ZA|G|466
8VVU|1|ZA|G|467

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

eS6

Chain U

L23